We do not share a bank account and Id like to use my bank account to pay for taxes on his freetaxusa account/filing.
It sounds like you are trying to pay with Direct pay?
I don't read anything that says you can't set up your account and pay.
https://www.irs.gov/payments/direct-pay-with-bank-account
FreeTaxUSA has a couple different way to pay taxes due too if you're interested. In this FAQ it mentions
Direct Debit, A check, money order, Credit Card, Debit Card, Electronic Payment, IRS online account in addition to connecting your bank account with Direct pay.
https://www.freetaxusa.com/answers?faq=112
Thank you I will give it a shot
Yes I was speaking of direct pay